BioSupercomputing Newsletter Vol.6

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Nano-Life Public Symposium
Next Generation Integrated Nanoscience Simulation Software (Nano)
Next-Generation Integrated Simulation of Living Matter Software (Life)

Date:

March 5 (Mon), 2012, 10:00 - 18:20 (joint sessions and get-together)
March 6 (Tue), 2012, 9:00 - 17:55 (parallel sessions)

Location:

Nichii Gakkan Kobe Port Island Center (Kobe City)
7-1-5 Minatojima-minamimachi, Chuo-ku, Kobe, Hyogo 650-0047

Conference Fee:

No charge (except get-together fee)

Program(TBA)

Day One / 

March 6 (Tue): 9:00 - 17:55 Parallel Sessions and Poster Session

Life Molecular Scale Team / Integrated Nanoscience Biomaterial Joint Session
Special Lecture Hiroki Ito (Fujitsu)
Joint Panel Discussion “The K Computer and What Lies Ahead (TBD)”

Day Two / 

March 6 (Tue): 9:00 - 17:55 Parallel Sessions and Poster Session

Nano Parallel Session
9:00 - 9:55 Integrated Nanoscience Main Report
10:10 - 12:10 Next-Generation Functional Nanomaterials for Information Technology
13:40 - 15:40 Joint Poster Session
15:50 - 17:50 Next-Generation Energy

Life Parallel Session
10:00 - 12:00 Panel Discussion “Life Revealed by HPC”
13:40 - 15:40 Joint Poster Session
15:50 - 17:50 Panel Discussion “ISLiM’s Contribution to Drug Discovery and Medical Development”

For details, please refer to the web page: http://nanogc.ims.ac.jp/nanogc/sympo2012


The Development and Use of the Next- Generation Supercomputer Project of the Ministry of Education, Culture, Sports, Scienceand Technology (MEXT).

Next-Generation Integrated Simulation of Living Matter

ロゴ

The “Next-Generation Integrated Simulation of Living Matter” is a project sponsored by the Ministry of Education, Culture, Sports, Science and Technology, in which research and development of simulation software to understand various phenomena occurring in the biological systems, including molecules and the human body, have been undertaken to realize a petascale simulation by making full use of the performance of a ten quadrillion speed computer known as “K computer”.

Ministry of Education, Culture, Sports, Science and Technology Project for high-degree application of high performance generalpurpose computer
HPCI Strategic Program Field 1

Supercomputational Life Science

The HPCI Strategic Program is a program of the Ministry of Education, Culture, Sports, Science and Technology aiming to produce ground-breaking results in computer science technology by maximizing the benefits of the HPCI (High Performance Computing Infrastructure) centered on the K computer, and encouraging developments in five research fields that need to be strategically addressed.
"Supercomputational Life Science" as a representative organization of Riken, has conducted research with the mission of understanding and predicting life phenomena based on largescale simulation and advanced data analysis, and to apply these results to design and implement medicine and medical care with its research.

BioSupercomputing Newsletter

BioSupercomputing Newsletter Vol.6

SPECIAL INTERVIEW
Development of New Fluid-structure Interaction Analysis (ZZ-EFSI) Resulting in Rapid Achievement of High Operation Performance
Research Associate Professor, School of Engineering, The University of Tokyo Kazuyasu Sugiyama
Interview with High-performance Computing Team Members: Continued Efforts in Tuning to Harness the Potentials and the High Capability of the K Computer
Group Director of Computational Molecular Design Group,
Quantitative Biology Center, RIKEN
Makoto Taiji
Senior Researcher of High-performance Computing Team,
Integrated Simulation of Living Matter Group,
Computational Science Research Program, RIKEN
Yousuke Ohno
Senior Researcher of High Performance Computing Development Team,
High Performance Computing Development Group,
RIKEN HPCI Program for Computational Life Sciences
Hiroshi Koyama
Researcher of High-performance Computing Team,
Integrated Simulation of Living Matter Group,
Computational Science Research Program, RIKEN
Gen Masumoto
Research Associate of High-performance Computing Team,
Integrated Simulation of Living Matter Group,
Computational Science Research Program, RIKEN
Aki Hasegawa
Report on Research
Functional Analysis of Multidrug Efflux Transporter AcrB by All-Atom Molecular Dynamics Simulation
Graduate School of Nanobioscience,
Yokohama City University
Tsutomu Yamane,
Mitsunori Ikeguchi
(Molecular Scale WG)
Multi-scale Modeling of the Human Cardiovascular System
Computational Science Research Program,
RIKEN Liang Fuyou (Organ and Body Scale WG)
Toward a spiking neuron-level model of the early saccade visuomotor system
Kyoto University Jan Moren
Nara Institute of Science and Technology Tomohiro Shibata
Okinawa Institute of Science and Technology Kenji Doya
(Brain and Neural Systems WG)
Developing the MD Core Program for Large Scale Parallel Computing
Computational Science Research Program,
RIKEN Yousuke Ohno (High-performance Computing Team)
SPECIAL INTERVIEW
Pioneering the Future of Computational Life Science toward Understanding and Prediction of Complex Life Phenomena
Program Director of RIKEN HPCI Program for Computational Life Sciences
Toshio Yanagida
Deputy- Program Director of RIKEN HPCI Program for Computational Life Sciences
Akinori Kidera
Deputy- Program Director of RIKEN HPCI Program for Computational Life Sciences
Yukihiro Eguchi
Report on Research
Free Energy Profile Calculations for Changes in Nucleosome Positioning with All-Atom Model Simulations
Quantum Beam Science Directorate, Japan Atomic Energy Agency
Hidetoshi Kono, Hisashi Ishida, Yoshiteru Yonetani, Kimiyoshi Ikebe (Field 1- Program 1)
Estimation of Skeletal Muscle Activity and Neural Model of Spinal Cord Reflex
Information Science and Technology, The University of Tokyo
Yoshihiko Nakamura (Field1 - Program 3)
Report
ISLiM Interim Accomplishment Meeting in 2011
Computational Science Research Program, RIKEN Eietsu Tamura
Computational Life Sciences Classes Held in High Schools
HPCI Program for Computational Life Sciences, RIKEN
Chisa Kamada, Yasuhiro Fujihara, Yukihiro Eguchi
Event information
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