PROGRAM
Proceedings (pdf) revised from paper is now available -> 
High resol. (76MB) ->
| December 3 (Mon) | |
| 10:00-10:20 | Opening Talk |
| Koji KAYA, RIKEN | |
| (Session Chair: Shu TAKAGI, RIKEN/University of Tokyo) | |
| 10:20-11:10 | ISLiM Keynote: Current status of software development in ISLiM and its future |
| Ryutaro HIMENO, RIKEN | |
| 11:10-12:00 | What can Multiscale Models do for Precision Medicine? |
| Grace Peng, National Institute of Health | |
| 12:00-13:00 | Lunch break |
| (Session Chair: Ryutaro HIMENO, RIKEN) | |
| 13:00-13:50 | Development of Multiscale Thrombosis Simulator |
| Shu TAKAGI, RIKEN/University of Tokyo | |
| 13:50-14:40 | Multiscale simulations of tumor angiogenesis with therapeutic applications |
| Aleksander Popel, Johns Hopkins University | |
| 14:40-15:10 | Coffee break |
| 15:10-16:00 | Multi-scale, multi-physics heart simulator "UT-Heart" for heart research |
| Seiryo SUGIURA, University of Tokyo | |
| (Session Chair: Hideo YOKOTA, RIKEN) | |
| 16:00-16:50 | Is eukaryotic cell biology ready for supercomputing? A perspective from the Virtual Cell project |
| Ion I. Moraru, University of Connecticut Health Center | |
| December 4 (Tue) | |
| (Session Chair: Makoto TAIJI, RIKEN) | |
| 10:00-10:50 | K computer Keynote: Real Peta-scale computing, stairway to Exa |
| Motoi OKUDA, Fujitsu | |
| 10:50-11:40 | Optimization of Life-Science applications on the K computer |
| Yousuke OHNO, RIKEN | |
| 11:40-12:30 | Large Scale Biomolecular Modeling with IBM Blue Gene |
| Ruhong Zhou, IBM | |
| 12:30-13:30 | Lunch break |
| (Session Chair: Ryutaro HIMENO, RIKEN) | |
| 13:30-13:55 | Research activity of Cell Scale Simulation Team |
| Hideo YOKOTA, RIKEN | |
| 13:55-14:20 | Dissection of regulatory mechanisms for metabolic systems by quantitative imaging mass spectrometry |
| Makoto SUEMATSU, Keio University | |
| (Session Chair: Shin ISHII, Kyoto University) | |
| 14:20-15:10 | Closing the loop: simulation of the whole sensory-motor neural network in action |
| Kenji DOYA, Okinawa Institute of Science and Technology (OIST) | |
| 15:10-15:40 | Coffee break |
| 15:40-16:30 | Multi-scale modelling of the motor system underlying goal-directed behaviour in a vertebrate model organism |
| Sten Grillner, Karolinska Institutet | |
| 16:30-17:20 | Brain-scale neuronal network simulations on K |
| Markus Diesmann, Forschungszentrum Jülich | |
| (17:30-19:00) | Social (Konshin-kai, optional) |
| December 5 (Wed) | |
| (Session Chair: Akinori KIDERA, RIKEN/Yokohama City University) | |
| 10:00-11:00 | Molecular machines and nuclear processes studied by coarse-grained molecular simulations |
| Shoji TAKADA, Kyoto University | |
| 11:00-12:00 | Biomolecular simulations under cellular environment |
| Yuji SUGITA, RIKEN | |
| 12:00-13:10 | Lunch break |
| (Session Chair: Mitsunori IKEGUCHI, Yokohama City University) | |
| 13:10-14:10 | Large-scale simulations of biomolecular machines |
| Karissa Sanbonmatsu, Los Alamos National Laboratory | |
| 14:10-15:10 | Use of Modeling and Simulation in Drug Discovery and Development: It is all about the Questions |
| Sandra R. B. Allerheiligen, Merck | |
| 15:10-15:40 | Coffee break |
| (Session Chair: Satoru MIYANO, University of Tokyo) | |
| 15:40-16:05 | Supercomputing for Next-Generation Cancer Research |
| Satoru MIYANO, University of Tokyo | |
| 16:05-16:30 | Large-scale protein-protein interaction network prediction by an exhaustive rigid docking system MEGADOCK |
| Yutaka AKIYAMA, Tokyo Institute of Technology | |
| (Session Chair: Yutaka AKIYAMA, Tokyo Institute of Technology) | |
| 16:30-16:55 | Supercomputing accelerates genomic medicine |
| Tatsuhiko TSUNODA, RIKEN | |
| 16:55-17:20 | Towards efficient improvement of transcriptional circuit models by Life Science Data Assimilation System (LiSDAS) |
| Tomoyuki HIGUCHI, Institute of Statistical Mathematics | |
| 17:20-17:30 | Closing Talk |
| Ryutaro HIMENO, RIKEN | |