top

PROGRAM

Proceedings (pdf) revised from paper is now available -> pdf High resol. (76MB) -> pdf

December 3 (Mon)
10:00-10:20 Opening Talk
  Koji KAYA, RIKEN
(Session Chair: Shu TAKAGI, RIKEN/University of Tokyo)
10:20-11:10 ISLiM Keynote: Current status of software development in ISLiM and its future
  Ryutaro HIMENO, RIKEN
11:10-12:00 What can Multiscale Models do for Precision Medicine?
  Grace Peng, National Institute of Health
12:00-13:00 Lunch break
(Session Chair: Ryutaro HIMENO, RIKEN)
13:00-13:50 Development of Multiscale Thrombosis Simulator
  Shu TAKAGI, RIKEN/University of Tokyo
13:50-14:40 Multiscale simulations of tumor angiogenesis with therapeutic applications
  Aleksander Popel, Johns Hopkins University
14:40-15:10 Coffee break
15:10-16:00 Multi-scale, multi-physics heart simulator "UT-Heart" for heart research
  Seiryo SUGIURA, University of Tokyo
(Session Chair: Hideo YOKOTA, RIKEN)
16:00-16:50 Is eukaryotic cell biology ready for supercomputing? A perspective from the Virtual Cell project
  Ion I. Moraru, University of Connecticut Health Center
December 4 (Tue)
(Session Chair: Makoto TAIJI, RIKEN) 
10:00-10:50 K computer Keynote: Real Peta-scale computing, stairway to Exa
  Motoi OKUDA, Fujitsu
10:50-11:40 Optimization of Life-Science applications on the K computer
  Yousuke OHNO, RIKEN
11:40-12:30 Large Scale Biomolecular Modeling with IBM Blue Gene
  Ruhong Zhou, IBM
12:30-13:30 Lunch break
(Session Chair: Ryutaro HIMENO, RIKEN) 
13:30-13:55 Research activity of Cell Scale Simulation Team
  Hideo YOKOTA, RIKEN
13:55-14:20 Dissection of regulatory mechanisms for metabolic systems by quantitative imaging mass spectrometry
  Makoto SUEMATSU, Keio University
(Session Chair: Shin ISHII, Kyoto University) 
14:20-15:10 Closing the loop: simulation of the whole sensory-motor neural network in action
  Kenji DOYA, Okinawa Institute of Science and Technology (OIST)
15:10-15:40 Coffee break
15:40-16:30 Multi-scale modelling of the motor system underlying goal-directed behaviour in a vertebrate model organism  
  Sten Grillner, Karolinska Institutet
16:30-17:20 Brain-scale neuronal network simulations on K
  Markus Diesmann, Forschungszentrum Jülich
(17:30-19:00) Social (Konshin-kai, optional)
December 5 (Wed)
(Session Chair: Akinori KIDERA, RIKEN/Yokohama City University) 
10:00-11:00 Molecular machines and nuclear processes studied by coarse-grained molecular simulations
  Shoji TAKADA, Kyoto University
11:00-12:00 Biomolecular simulations under cellular environment
  Yuji SUGITA, RIKEN
12:00-13:10 Lunch break
(Session Chair: Mitsunori IKEGUCHI, Yokohama City University) 
13:10-14:10 Large-scale simulations of biomolecular machines
  Karissa Sanbonmatsu, Los Alamos National Laboratory
14:10-15:10 Use of Modeling and Simulation in Drug Discovery and Development: It is all about the Questions
  Sandra R. B. Allerheiligen, Merck
15:10-15:40 Coffee break
(Session Chair: Satoru MIYANO, University of Tokyo) 
15:40-16:05 Supercomputing for Next-Generation Cancer Research
  Satoru MIYANO, University of Tokyo
16:05-16:30 Large-scale protein-protein interaction network prediction by an exhaustive rigid docking system MEGADOCK
  Yutaka AKIYAMA, Tokyo Institute of Technology
(Session Chair: Yutaka AKIYAMA, Tokyo Institute of Technology) 
16:30-16:55 Supercomputing accelerates genomic medicine
  Tatsuhiko TSUNODA, RIKEN
16:55-17:20 Towards efficient improvement of transcriptional circuit models by Life Science Data Assimilation System (LiSDAS)
Tomoyuki HIGUCHI, Institute of Statistical Mathematics
17:20-17:30 Closing Talk
  Ryutaro HIMENO, RIKEN