BioSupercomputing Newsletter Vol.4

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Report
Report on the workshop in BMB2010 (Joint Meeting of the 33rd Congress of the Molecular Biology Society of Japan and the 83th Congress of the Japanese Biochemical Society)

The Molecular Biology Society of Japan and the Japanese Biochemical Society are both large academic societies representing biology study in Japan which have more than 10,000 members. In 2010, particularly, the annual congress of both societies was held as a joint meeting under the name BMB2010. We, the “Integrated Simulation of Living Matter” project, held a workshop at this congress to appeal for research in the biological field.

This project is a challenge for various problems in life science from the viewpoint of computational science, while on the other hand, expectations for computational science have also been increasing tremendously in the field of biology in recent years. This workshop was a timely project from these two aspects.

In this program, the major point of the project and outline of the whole project were explained, and then multi-scale research for life phenomena from the micro-scale to the macro-scale was introduced.

On the day of the workshop, the conference room with a capacity of more than 100 was so crowded that some people had to stand, which suggested the level of interest in this project in the biology field. A question-andanswer session was also held interactively, and the project members obtained meaningful opinions from biologists.

It is considered that the computational scientific method in life science will become increasingly important in the future. In the future, life science, and communication between the experimental method and the computational scientific method will become essential. It can be said that this workshop played a part in the creation of such bidirectional communication.

BMB2010 Workshop “Integrated Simulation of Living Matter of the Next-Generation”

14 : 30 -16 : 30, December 9 (Thursday) at 2B Confer ence room of Kobe International Exhibition Hall
Organizer:
Atsushi Mochizuki (Advanced Science Institute, RIKEN)
Hideo Yokota (Computational Science Research Program, RIKEN)

Integrated Simulation of Living Matter of the Next-Generation

BioSupercomputing Newsletter Vol.4

SPECIAL INTERVIEW
In order to change from observation-type medical practice focusing on experience to prediction-type medical practice to construct the base of theoretical medicine
Professor, Department of Internal Medicine (Cardiovascular Medicine), Director of the Metabolic Disease Research Center, Bio-Research Medical Center, Tokai University Graduate School of Medicine, and Director, Department of Metabolic System Medicine, Tokai University General Medical Laboratory Shinya Goto
It is expected that new possibilities in nutrition science and health control will be opened up
by simulation science

EXECUTIVE PROFESSIONAL Health infomatics DEPT., Ajinomoto Co., Inc. Toshihiko Ando
Report on Research
The functions of a multidrug discharging transporter were verified by coarse graining molecular simulation (Molecular Scale WG)
Graduate School of Science, Kyoto University Shoji Takada / Xin-Qiu Yao / Hiroo Kenzaki
Cell simulation considering time-space (Cell Scale WG)
Computational Science Research Program, RIKEN Yasuhiro Sunaga
Development of HIFU simulator for non-invasive treatment with high-intensity focused ultrasound (Organ and Body Scale WG)
VCAD System Research Program, RIKEN Kohei Okita
PLATO: Platform for a collaborative brain system modeling toward development of large scale mathematical model.(Brain and Neural WG)
①Computational Science Research Program, RIKEN
②Brain Science Institute, RIKEN
Keiichiro Inagaki①/ Takayuki Kannon②/ Nilton L. Kamiji②/ Koji Makimura②/ Shiro Usui ①②
Report
Report on the workshop in BMB2011 (Joint Meeting of the 33rd Congress of the Molecular Biology Society of Japan and the 83th Congress of the Japanese Biochemical Society)
Winter School 2011 for the Integrated Simulation of Living Matter
Computational Science Research Program, RIKEN Yasuhiro Ishimine (Organ and Body Scale WG)
The Institute of Medical Science, The University of Tokyo Hidetoshi Urakubo (Brain and Neural WG)
Computational Science Research Program, RIKEN Yasuhiro Sunaga (Cell Scale WG)
Computational Science Research Program, RIKEN Gen Masumoto (High-Performance Computing Team)
Computational Science Research Program, RIKEN Keiji Misawa (Data Analysis Fusion WG)
Computational Science Research Program, RIKEN Hisayuki Miyashita (Molecular Scale WG)
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