Application codes targeting multiscale simulation by the method of quantum mechanics (QM), molecular mechanics (MM), coarse grained model (CG), and coupled QM/MM and MM/CG.

The cell simulation integrated platform as a kernel of cell scale research.

Simulation of intra-cell phenomena by the voxel dividing.

The simulation-based support system for the next-generation medical treatment. For example, thrombosis simulator is developed through the introduction of the coupling method between continuum scale simulation for blood flow and cell level simulation for the aggregation of platelets.

The data analysis codes for explosive experimental data of genes and genomes, which cannot be realized without peta-scale computing and a peta-scale modeling technology based on data assimilation that fuses observational data and simulation models.

The simulation study codes for the development and plasticity of single neurons, the dynamics of cortical neuron ensembles, and the processing of invertebrate's olfactory system and mammalian visual system.

The highly parallel software for the next-generation supercomputer system in addition to the parallelized libraries for the molecular dynamics, the molecular orbital method, the fluid/elastic mechanics, etc. as well as visualization and workflow tools.